Hi Joshua,
Our documentation for pulling records down is
here. Aside from that it, if the two tables coming down are being treated the same by your mobile file, then either
a) the two tables being pulled down have the same object name for the first tab on their packaging layout in GoZyncConnector; (See the section in our docs "Packaging your data / In GoZyncConnector: Layout"
b) or your branch for this second table in the script "Table Branches" in your mobile file is calling the same "...Set Fields" script for both sources. (See the section in our docs "In Mobile: Scripts, Part 2")
c) or your script "Get Records From Server ( RecordType )" in mobile is calling the same script in GoZyncConnector for both record types.
Check those three things and let me know if you see it.
Hope that helps,
John